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Simplify Payroll with Automated Payroll Processing Software

Running payroll shouldn’t be complicated or time-consuming. CheckMark Payroll Solutions help you process payroll quickly, accurately, and with full control, whether you pay one employee or manage multiple companies.

payroll processing

Simple Step-by-Step Payroll Processing

Our payroll processing system follows a clear, intuitive workflow so you can run payroll without confusion.

Easy Payroll Workflow

  • Enter or import employee hours
  • Automatically calculate pay
  • Review and finalize payroll

This structured process ensures accuracy at every step while keeping payroll simple even for non-experts.

Type of Payroll

Process Any Type of Payroll with Ease

No matter how your employees are paid, our automated payroll processing software handles it seamlessly.

Supported Payroll Types

  • Hourly wages
  • Salaried employees
  • Overtime and double-time pay
  • Bonuses and special checks
  • After-the-fact payroll adjustments

Flexible Payroll Schedules

  • Weekly
  • Bi-weekly
  • Monthly
  • Semi-monthly
  • Quarterly
  • Custom schedules
payroll calculations

Automatic Payroll Calculations for Accuracy

Eliminate manual calculations and reduce costly payroll errors.

Smart Payroll Calculations

  • Automatically calculate gross pay, taxes, and net pay
  • Handles multiple pay rates and wage types
  • Applies deductions and additional income automatically
  • Supports complex payroll scenarios with built-in logic

Our small business payroll processing uses proven calculation methods to ensure consistent, accurate results every time.

payroll before finalizing

Review, Edit & Control Payroll Before Finalizing

Unlike rigid payroll systems, you stay in control of your payroll process

Full Payroll Control

  • Review payroll calculations before creating checks
  • Modify paycheck details (amounts, dates, check numbers)
  • Void or delete checks when needed
  • Recalculate payroll instantly after changes

This flexibility ensures you can catch and fix issues before they become problems.

print payroll

Create & Print Payroll Checks Instantly

Complete payroll quickly and efficiently.

Flexible Payroll Options

  • Generate payroll checks in seconds
  • Print checks using customizable formats
  • Email pay stubs to employees
  • Maintain a complete payroll record for every run

CheckMark gives you everything you need to complete payroll without relying on external systems.

handle adjustments

Handle Adjustments & Special Payroll Runs

Manage real-world payroll adjustments with ease.

Advanced Payroll Adjustments

  • Process bonus checks separately
  • Run after-the-fact payroll corrections
  • Adjust employee wages or hours mid-cycle
  • Re-run payroll without starting over

Designed to handle real-life payroll scenarios, not just ideal ones.

allocate wages

Allocate Wages After Payroll Processing

Gain better reporting and accounting control.

Wage Allocation Features

  • Allocate wages by department or job after payroll is created
  • Reallocate hours for hourly employees
  • Adjust distributions for salaried employees

This gives you flexibility for job costing, reporting, and accounting accuracy.

Why Choose CheckMark

Payroll can be time-consuming and prone to errors, especially when done manually. Calculating wages, deductions, and managing different pay schedules can quickly become overwhelming.

CheckMark simplifies payroll by automating calculations and guiding you through each step. Run payroll faster, reduce errors, and stay in control, whether for one business or multiple companies.

  • Built for Small Businesses & Accountants
  • 40+ Years of Payroll Expertise
  • Desktop & Online Flexibility
  • US-Based Customer Support
  • Affordable, Transparent Pricing

Choose the Right Payroll Solution for Your Business

CheckMark Payroll Software

CheckMark Online Payroll

Best for businesses that want to run payroll from anywhere without managing software or updates.


  • Run payroll online anytime, anywhere
  • Fully automated payroll processing with real-time calculations
  • No installation required — start instantly
  • Ideal for remote teams & multi-location businesses
  • Always up-to-date with automatic updates
  • Easy collaboration with accountants & staff
Get Started with Online Payroll
Try it Free for 14 Days
CheckMark Payroll Software

CheckMark Payroll Software

Best for businesses that want full control over payroll with software installed on their own computer.


  • Powerful desktop software with full control
  • Designed for in-house payroll with full data ownership
  • Manage multiple companies with licensed access
  • Process payroll for unlimited employees without any limit
  • Ideal for managing multiple company payrolls from one system
  • Secure local data storage with full ownership
Download Desktop Payroll Trial
Try it Free for 60 Days

What Businesses Say About CheckMark

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Meets the entire needs of a payroll process...

CheckMark is an incredibly user friendly software that meets the entire needs of a payroll process. It is very affordable and the few times I have had to reach out to customer support, they have always been very helpful.

Allyson, Minnesota

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Effortless payroll solution for my small farm business…

CheckMark provides enough complexity to handle our small farm business payroll with Workers comp departmental breakdowns and simple enough that any of our administrative staff can process it.

Lee, Ohio

Explore All Payroll Features

Tax Compliance

Automatically calculate and apply payroll taxes with built-in compliance tools.

Read More

Employee Management

Manage employee pay rates, taxes, and payroll information from one centralized system.

Read More

Payments

Pay employees easily with MICR checks and ACH direct deposit options.

Read More
payroll software proces

Ready to Simplify Payroll Processing?

Run payroll faster, easier, and with confidence using CheckMark Payroll Software.

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